Modifies aid and aid mea files based on manual reclassification

vpr_autoid_create(
  reclassify,
  misclassified,
  basepath,
  day,
  hour,
  mea = TRUE,
  categories
)

Arguments

reclassify: list of reclassify files (output from vpr_manual_classification())
misclassified: list misclassify files (output from vpr_manual_classification())
basepath: base path to auto ID folder eg 'E:/autoID_EC_07032019/'
day: day identifier for relevant aid & aidmeas files
hour: hour identifier for relevant aid & aidmeas files
mea: logical indicating whether or not there are accompanying measurement files to be created
categories: A list object with all the potential classification categories

examples

basepath <- 'E:/autoID_EC_07032019/' day <- '289' hr <- '08' categories <- c("bad_image_blurry","bad_image_malfunction","bad_image_strobe","Calanus","chaetognaths","ctenophores","krill","marine_snow","Other","small_copepod","stick") day_hour_files <- paste0('d', day, '.h', hr) misclassified <- list.files(day_hour_files, pattern = 'misclassified_', full.names = TRUE) reclassify <- list.files(day_hour_files, pattern = 'reclassify_', full.names = TRUE) vpr_autoid_create(reclassify, misclassified, basepath, categories)

E. Chisholm