Package index • vprr

All functions
`bin_calculate()`	Get bin averages for VPR and CTD data
`bin_cast()`	Bin vpr data
`category_conc_n`	A binned data frame of concentration data per category
`concentration_category()`	Binned concentrations
`ctd_cast()`	Isolate ascending or descending section of ctd cast
`ctd_dat_combine`	VPR CTD data
`ctd_df_cols()`	Read CTD data (SBE49) from CTD- VPR package
`ctd_roi_merge`	VPR CTD data combined with tabulated ROIs
`ctd_roi_oce`	VPR data including CTD and ROI information
`insertRow()`	INTERNAL USE ONLY quick data frame function from github to insert row inside dat frame
`isopycnal_calculate()`	Get vector to draw isopycnal lines on TS plot Used internally to create TS plots
`normalize_matrix()`	Normalize a matrix
`package-imports`	Packages
`px_to_mm()`	Get conversion factor for pixels to mm for roi measurements
`read_aid_cnn()`	Read aid files produced by automated classification
`roi_dat_combine`	VPR ROI data
`roimeas_dat_combine`	VPR measurement data calculated by Visual Plankton
`size_df_f`	VPR size information dataframe
`vpr_autoid_check()`	Checks manually created aid files for errors
`vpr_autoid_copy()`	Copy VPR images into folders
`vpr_autoid_create()`	Modifies aid and aid mea files based on manual reclassification
`vpr_autoid_read()`	Read VPR aid files
`vpr_category()`	Get category ids from string
`vpr_category_create()`	Create a new category to be considered for classification after processing with VP
`vpr_ctd_files()`	Create a list of ctd files to be read
`vpr_ctd_read()`	Read and format CTD VPR data
`vpr_ctd_ymd()`	Add Year/ month/ day hour:minute:second information
`vpr_ctdroi_merge()`	Merge CTD and ROI data from VPR
`vpr_ctdroisize_merge()`	Format CTD and Size data from VPR
`vpr_day()`	Get day identifier
`vpr_dayhour()`	Find day & hour info to match each station of interest for processing
`vpr_export()`	Format and export VPR data for publication (IN DEVELOPMENT) Exports a csv file with standard column names based on British Oceanographic Data Centre, BODC::P01 and DarwinCore (DwC) naming conventions, and a JSON metadata file for station level metadata
`vpr_hour()`	Get hour identifier
`vpr_img_category()`	Explore images by depth and classification
`vpr_img_check()`	Remove ROI strings from aid and aidmeas files based on a manually organized folder of images
`vpr_img_copy()`	Image copying function for specific category of interest
`vpr_img_depth()`	Explore VPR images by depth bin
`vpr_img_reclassified()`	Explore reclassified images
`vpr_manual_classification()`	Function to check results of classification manually
`vpr_oce_create()`	Create ctd oce object with vpr data
`vpr_plot_TS()`	Make a balloon plot against a TS plot
`vpr_plot_TScat()`	Make a balloon plot
`vpr_plot_contour()`	Interpolated contour plot of particular variable
`vpr_plot_profile()`	Plots VPR profiles of temperature, salinity, density, fluorescence and concentration (by classification group)
`vpr_pred_read()`	Read prediction output from a CNN model
`vpr_roi()`	Get roi ids from string
`vpr_roi_concentration()`	Calculate VPR concentrations
`vpr_save()`	Save VPR data as an as.oce object
`vpr_size_bin()`	Bin VPR size data
`vpr_trrois_size()`	Get size data from idsize files

Reference

All functions