Calculate VPR concentrations — vpr_roi

Calculates concentrations for each named category in dataframe

vpr_roi_concentration(
  data,
  category_list,
  station_of_interest,
  binSize,
  imageVolume
)

Arguments

data: a VPR dataframe as produced by vpr_ctdroi_merge
category_list: a list of character strings representing category present in the station being processed
station_of_interest: The station being processed
binSize: passed to bin_calculate, determines size of depth bins over which data is averaged
imageVolume: the volume of VPR images used for calculating concentrations (mm^3)

Examples


data('ctd_roi_merge')
ctd_roi_merge$time_hr <- ctd_roi_merge$time_ms /3.6e+06

category_list <- c('Calanus', 'krill')
binSize <- 5
station_of_interest <- 'test'
imageVolume <- 83663

category_conc_n <- vpr_roi_concentration(ctd_roi_merge, category_list,
station_of_interest, binSize, imageVolume)
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: Cast descending_3 is too small to calculate information for bins of size 5
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: no non-missing arguments to min; returning Inf
#> Warning: no non-missing arguments to max; returning -Inf
#> Warning: Cast descending_3 is too small to calculate information for bins of size 5